Refresh registry derived files (maintainer; light by default)

Light path (audit = FALSE, default):

1. Rebuild index.csv from studies/*.yml stubs

2. Rebuild shiny_studies.json (via build_registry_index())

3. Seed audit_jobs.csv gaps from bake timings / artifacts / prior RDS (no live engines)

4. Rebuild audit_summary.json / audit_latest.rds (Shiny health bar)

Usage

refresh_registry(
  registry_root = NULL,
  audit = FALSE,
  patience = 20,
  install_deps = FALSE,
  verbose = TRUE,
  substantive = TRUE,
  seed = TRUE
)

Arguments

registry_root

Path to the registry repository root.

audit

FALSE (default) for light refresh only; TRUE for a full live audit; or a character vector of DOIs/handles for a subset audit.

patience

Seconds per replication when auditing.

install_deps

Passed to audit_everything().

verbose

Passed to seed / audit_everything().

substantive

Passed to audit_everything().

seed

If TRUE (default), fill audit CSV gaps before rebuilding the summary. Set FALSE to rebuild the summary from the existing CSV only.

Value

Invisibly, a list with index, optional seed, and optional audit.

Details

Heavy path: set audit = TRUE for a full live audit_everything(), or pass a character vector of DOIs/handles to audit only those studies. Live audit always runs after the light path and refreshes the derived summary.

Examples

if (FALSE) { # \dontrun{
options(replicateEverything.registry_root = "../registry")
refresh_registry()
refresh_registry(audit = TRUE, patience = 20)
refresh_registry(audit = "10.1177/00491241211036161")
} # }